OPEN SOURCE

MODEL.DB SUBMISSIONS
Extracellular fields for a three-dimensional network of cells using NEURON >
Appukuttan S, Brain KL, Manchanda R (2017) Modeling extracellular fields for a three-dimensional network of cells using NEURON. J Neurosci Methods 290:27-38.

URL: https://senselab.med.yale.edu/modeldb/ShowModel.cshtml?model=240957
License : - NA -
HOC NMODL MATLAB
Gap junction subtypes >
Appukuttan S, Sathe R, Manchanda R (2016) Influence of gap junction subtypes on passive and active electrical properties of syncytial tissues 2016 International Conference on Systems in Medicine and Biology (ICSMB) :128-131.

URL: https://senselab.med.yale.edu/modeldb/ShowModel.cshtml?model=244692
License : - NA -
HOC NMODL
Multi-timescale adaptive threshold model >
Kobayashi R, Tsubo Y, Shinomoto S (2009) Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Front Comput Neurosci 3:9.

URL: https://senselab.med.yale.edu/modeldb/ShowModel.cshtml?model=226422
License : - NA -
Python NMODL
SIM.TOOL.DB SUBMISSIONS
mknrndll shortcut for Windows >
This NEURON plug-in would provide a shortcut for compiling .mod files by adding ‘mknrndll’ as an option to mouse right-click context menu. It also avoids having to specify the compile directory by implicitly accepting the folder inside which you right-clicked as the location.

URL: https://senselab.med.yale.edu/SimToolDB/showTool.cshtml?Tool=154752
License : - NA -
HOC
Section Copy Tool >
Copies biophysical data (Distributed Mechanisms & L, nseg, Ra) from a specified section to all sections contained in the given SectionList.

URL: https://senselab.med.yale.edu/SimToolDB/showTool.cshtml?Tool=155716
License : - NA -
HOC
SELECTED GITHUB REPOSITORIES
ebrains-live-papers >
EBRAINS Live Paper Platform + EBRAINS Live Paper Builder Tool.
URL: https://github.com/appukuttan-shailesh/ebrains-live-papers
License : Apache-2.0 License
ReactJS JavaScript HTML CSS
hbp-validation-client >
A Python package for working with the Human Brain Project Model Validation Framework.
URL: https://github.com/appukuttan-shailesh/hbp-validation-client
License : BSD 3-Clause "New" or "Revised" License
Python JavaScript HTML CSS
hbp_archive >
A high-level API for interacting with the Human Brain Project archival storage at CSCS.
URL: https://github.com/appukuttan-shailesh/hbp_archive
License : Apache License 2.0
Python
PyNN >
A Python package for simulator-independent specification of neuronal network models.
URL: https://github.com/appukuttan-shailesh/PyNN
License : CeCILL (Ce[a] C[nrs] I[nria] L[ogiciel] L[ibre])
Python
nest-simulator >
The NEST simulator.
URL: https://github.com/appukuttan-shailesh/nest-simulator
License : GNU General Public License v2.0
Python C++
morphounit >
A SciUnit library for data-driven testing of neuronal morphologies.
URL: https://github.com/appukuttan-shailesh/morphounit
License : BSD 3-Clause "New" or "Revised" License
Python
eFELunit >
A SciUnit library for data-driven testing of eFEL features extracted from computational models.
URL: https://github.com/appukuttan-shailesh/eFELunit
License : BSD 3-Clause "New" or "Revised" License
Python
basalunit >
A SciUnit library for data-driven testing of basal ganglia models.
URL: https://github.com/appukuttan-shailesh/basalunit
License : BSD 3-Clause "New" or "Revised" License
Python
usecases >
This repository contains all the information related to the use cases that are shown in the HBP's Brain Simulation Platform.
URL: https://github.com/appukuttan-shailesh/usecases
License : - NA -
Vue JavaScript Python CSS HTML
hbp-bsp-live-papers >
Human Brain Project - Brain Simulation Platform "Live Papers".
URL: https://github.com/appukuttan-shailesh/hbp-bsp-live-papers
License : - NA -
HTML CSS
bluenaas_capabilities >
A SciUnit library for handling NEURON-Python models having different internal implementations/formats.
URL: https://github.com/appukuttan-shailesh/bluenaas_capabilities
License : BSD 3-Clause "New" or "Revised" License
Python